Cryo-EM Structure of Human Kv3.1 in Complex with Modulator AUT1
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8quc
Q-score: 0.551
Liang Q, Chi G, Cirqueira L, Zhi L, Marasco A, Pilati N, Gunthorpe MJ, Alvaro G, Large CH, Sauer DB, Treptow W, Covarrubias M
Nat Commun (2024) 15 pp. 2533-2533 [ Pubmed: 38514618 DOI: doi:10.1038/s41467-024-46813-8 ]
- Water (18 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phoshocholine (734 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Potassium voltage-gated channel subfamily c member 1 (58 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- (5r)-5-ethyl-3-[6-(3-methoxy-4-methyl-phenoxy)pyridin-3-yl]imidazolidine-2,4-dione (341 Da, Ligand)
- Homotetramer of human kv3.1a with modulator aut1 (240 kDa, Complex from Homo sapiens)
Cryo-EM Structure of Human Kv3.1 in Complex with Modulator AUT5
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8qud
Q-score: 0.555
Liang Q, Chi G, Cirqueira L, Zhi L, Marasco A, Pilati N, Gunthorpe MJ, Alvaro G, Large CH, Sauer DB, Treptow W, Covarrubias M
Nat Commun (2024) 15 pp. 2533-2533 [ Pubmed: 38514618 DOI: doi:10.1038/s41467-024-46813-8 ]
- Water (18 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phoshocholine (734 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Potassium voltage-gated channel subfamily c member 1 (58 kDa, Protein from Homo sapiens)
- Homotetramer of human kv3.1a with modulator aut5 (240 kDa, Complex from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- (5r)-5-ethyl-3-(6-spiro[2h-1-benzofuran-3,1'-cyclopropane]-4-yloxypyridin-3-yl)imidazolidine-2,4-dione (365 Da, Ligand)
Late alpha-Synuclein fibril structure from liquid-liquid phase separations.
Resolution: 3.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 8ri9
Q-score: 0.498
Chen SW, Barritt JD, Cascella R, Bigi A, Cecchi C, Banchelli M, Gallo A, Jarvis JA, Chiti F, Dobson CM, Fusco G, De Simone A
J Am Chem Soc (2024) 146 pp. 10537-10549 [ DOI: doi:10.1021/jacs.3c14703 Pubmed: 38567991 ]
- Alpha-synuclein (14 kDa, Protein from Homo sapiens)
- Fibrillar complex of alpha-synuclein (Complex from Homo sapiens)
IFTB1 subcomplex of anterograde intraflagellar transport trains (Chlamydomonas reinhardtii)
Resolution: 9.9 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8bd7
Q-score: 0.116
Nat Struct Mol Biol (2023) 30 pp. 584-593 [ DOI: doi:10.1038/s41594-022-00905-5 Pubmed: 36593313 ]
- Ift70 (74 kDa, Protein from Chlamydomonas reinhardtii)
- Osm-6-like protein (50 kDa, Protein from Chlamydomonas reinhardtii)
- Intraflagellar transport protein 81 (77 kDa, Protein from Chlamydomonas reinhardtii)
- Intraflagellar transport protein 46 (37 kDa, Protein from Chlamydomonas reinhardtii)
- Clusterin-associated protein 1 (49 kDa, Protein from Chlamydomonas reinhardtii)
- Intraflagellar transport particle protein ift20 (15 kDa, Protein from Chlamydomonas reinhardtii)
- Intraflagellar transport protein 80 (85 kDa, Protein from Chlamydomonas reinhardtii)
- Intraflagellar transport protein 57 (51 kDa, Protein from Chlamydomonas reinhardtii)
- Intraflagellar transport protein 172 (197 kDa, Protein from Chlamydomonas reinhardtii)
- Two iftb repeats from anterograde intraflagellar transport trains within native chlamydomonas reinhardtii cilia (Complex from Chlamydomonas reinhardtii)
- Intraflagellar transport protein 56 (63 kDa, Protein from Chlamydomonas reinhardtii)
- Intraflagellar transport protein 74 (71 kDa, Protein from Chlamydomonas reinhardtii)
- Ift54 (54 kDa, Protein from Chlamydomonas reinhardtii)
- Ift88 (86 kDa, Protein from Chlamydomonas reinhardtii)
Resolution: 3.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 8efh
Q-score: 0.458
Doran MH, Rynkiewicz MJ, Rassici D, Bodt SML, Barry ME, Bullitt E, Yengo CM, Moore JR, Lehman W
J Gen Physiol (2023) 155 [ DOI: doi:10.1085/jgp.202213267 Pubmed: 36633586 ]
- Actin, alpha cardiac muscle 1 (42 kDa, Protein from pig)
- Magnesium ion (24 Da, Ligand)
- Tropomyosin alpha-1 chain (32 kDa, Protein from Homo sapiens)
- Beta-cardiac myosin ii (99 kDa, Protein from Homo sapiens)
- Human cardiac actin-tropomyosin-beta-myosin ii complex bound to adpmg2+. (Complex)
- Human cardiac tropomyosin (Complex from Homo sapiens)
- Cardiac f-actin complex (Complex from Sus scrofa)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Human beta-cardiac myosin ii (Complex from Homo sapiens)
Helical reconstruction of the human cardiac actin-tropomyosin-myosin complex in the rigor form
Resolution: 3.4 Å
EM Method: Helical reconstruction
Fitted PDBs: 8efi
Q-score: 0.435
Doran MH, Rynkiewicz MJ, Pavadai E, Bodt SML, Rasicci D, Moore JR, Yengo CM, Bullitt E, Lehman W
J Gen Physiol (2023) 155 [ DOI: doi:10.1085/jgp.202213274 Pubmed: 36459134 ]
- Actin, alpha cardiac muscle 1 (42 kDa, Protein from pig)
- Human cardiac myosin ii (Complex from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Tropomyosin alpha-1 chain (32 kDa, Protein from Homo sapiens)
- Human cardiac actin-tropomyosin-beta-myosin ii complex in the rigor form. (Complex)
- Human cardiac tropomyosin (Complex from Homo sapiens)
- Cardiac f-actin complex (Complex from Sus scrofa)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Myosin-7 (223 kDa, Protein from Homo sapiens)
Helical reconstruction of the human cardiac actin-tropomyosin-myosin loop 4 7G mutant complex
Resolution: 3.6 Å
EM Method: Helical reconstruction
Fitted PDBs: 8enc
Q-score: 0.405
Doran MH, Rynkiewicz MJ, Pavadai E, Bodt SML, Rasicci D, Moore JR, Yengo CM, Bullitt E, Lehman W
J Gen Physiol (2023) 155 [ DOI: doi:10.1085/jgp.202213274 Pubmed: 36459134 ]
- Actin, alpha cardiac muscle 1 (42 kDa, Protein from pig)
- Magnesium ion (24 Da, Ligand)
- Tropomyosin alpha-1 chain (32 kDa, Protein from Homo sapiens)
- Myosin-7 (222 kDa, Protein from Homo sapiens)
- Human cardiac actin-tropomyosin-beta-myosin ii complex with 7g loop 4 mutation (Complex)
- Human cardiac tropomyosin (Complex from Homo sapiens)
- Cardiac f-actin complex (Complex from Sus scrofa)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Human beta-cardiac myosin ii with seven (366-372) loop 4 residues mutated to glycine. (Complex from Homo sapiens)
Human voltage-gated potassium channel Kv3.1 (apo condition)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7phh
Q-score: 0.485
Chi G, Liang Q, Sridhar A, Cowgill JB, Sader K, Radjainia M, Qian P, Castro-Hartmann P, Venkaya S, Singh NK, McKinley G, Fernandez-Cid A, Mukhopadhyay SMM, Burgess-Brown NA, Delemotte L, Covarrubias M, Durr KL
Nat Commun (2022) 13 pp. 4087-4087 [ DOI: doi:10.1038/s41467-022-29594-w Pubmed: 35840580 ]
- Potassium voltage-gated channel, shaw-related subfamily, member 1 (58 kDa, Protein from Homo sapiens)
- 1,2-diacyl-sn-glycero-3-phoshocholine (734 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Homotetrameric complex of human kv3.1 (Complex from Homo sapiens)
- Potassium ion (39 Da, Ligand)
Human voltage-gated potassium channel Kv3.1 (with Zn)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7phi
Q-score: 0.476
Chi G, Liang Q, Sridhar A, Cowgill JB, Sader K, Radjainia M, Qian P, Castro-Hartmann P, Venkaya S, Singh NK, McKinley G, Fernandez-Cid A, Mukhopadhyay SMM, Burgess-Brown NA, Delemotte L, Covarrubias M, Durr KL
Nat Commun (2022) 13 pp. 4087-4087 [ DOI: doi:10.1038/s41467-022-29594-w Pubmed: 35840580 ]
- Potassium voltage-gated channel, shaw-related subfamily, member 1 (58 kDa, Protein from Homo sapiens)
- 1,2-diacyl-sn-glycero-3-phoshocholine (734 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Homotetrameric complex of human kv3.1 (Complex from Homo sapiens)
- Potassium ion (39 Da, Ligand)
Human voltage-gated potassium channel Kv3.1 in dimeric state (with Zn)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7phk
Q-score: 0.381
Chi G, Liang Q, Sridhar A, Cowgill JB, Sader K, Radjainia M, Qian P, Castro-Hartmann P, Venkaya S, Singh NK, McKinley G, Fernandez-Cid A, Mukhopadhyay SMM, Burgess-Brown NA, Delemotte L, Covarrubias M, Durr KL
Nat Commun (2022) 13 pp. 4087-4087 [ DOI: doi:10.1038/s41467-022-29594-w Pubmed: 35840580 ]
- Potassium voltage-gated channel, shaw-related subfamily, member 1 (58 kDa, Protein from Homo sapiens)
- 1,2-diacyl-sn-glycero-3-phoshocholine (734 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Homotetrameric complex of human kv3.1 (Complex from Homo sapiens)
- Potassium ion (39 Da, Ligand)